Dimer-covering resonating-valence-bond treatment of single-walled zigzag carbon nanotubes

Single-walled zigzag carbon nanotubes with h hexagons around the carbon nanotube, h ranging from 3 to 19, have been investigated from a resonating-valence-bond point of view. The energies calculated for the undoped h = 3n-1 zigzag carbon nanotubes, n integer, suggest that the two lowest-lying phases are degenerate. Therefore, de-confined low-energy topological spin defects would occur. Then, these carbon nanotubes should be conductors, in analogy to polyacethylene. In clear contrast, no such degeneracy is obtained for either, h = 3n+1 or h = 3n, so bound pairs of topological spin defects are expected to occur in these cases. Our findings provide further insights into electron correlation and exchange effects in carbon nanotubes

Analysis of infected human mononuclear cells by atomic force microscopy

The surfaces of the human lymphoid cells of the line H9 chronically infected with the Human Immunodeficiency Virus HIV-1, and of human monocytes acutely infected in vitro with Mycobacterium Tuberculosis (MTB) were dried, fixed and imaged with atomic force microscopy (AFM). These images were compared with those of non-infected samples. Dried and fixed samples of infected cells can be distinguished from non-infected ones by AFM technology due to their different surface structures and by the presence of pathogenic (viz al or mycobacterial) agents on the cell surface

Neutral competition of stem cells is skewed by proliferative changes downstream of Hh and Hpo.

Neutral competition, an emerging feature of stem cell homeostasis, posits that individual stem cells can be lost and replaced by their neighbors stochastically, resulting in chance dominance of a clone at the niche. A single stem cell with an oncogenic mutation could bias this process and clonally spread the mutation throughout the stem cell pool. The Drosophila testis provides an ideal system for testing this model. The niche supports two stem cell populations that compete for niche occupancy. Here, we show that cyst stem cells (CySCs) conform to the paradigm of neutral competition and that clonal deregulation of either the Hedgehog (Hh) or Hippo (Hpo) pathway allows a single CySC to colonize the niche. We find that the driving force behind such behavior is accelerated proliferation. Our results demonstrate that a single stem cell colonizes its niche through oncogenic mutation by co-opting an underlying homeostatic process.This is the final version. It was first published by Wiley at http://onlinelibrary.wiley.com/doi/10.15252/embj.201387500/abstract

Обоснование критериев оценки биологической активности минеральных вод

Автори під час проведення порівняльного аналізу біологічної дії борвміщуючих мінеральних вод різної мінералізації виявила якісну та кількісну однаковість їх впливу. Інтегративні показники властивостей мінеральних вод, що використовуються на сьогоднішній день, не пояснюють виявлені особливості дії. Автори роблять висновок, що застосування відносних показників властивостей мінеральних вод, прив’язаних до 1 граму мінеральних речовин, які містяться у воді, дозволить більш точно оцінювати властивості мінеральних вод.Authors, carrying out the comparative analysis of biological action of the boron containing mineral waters of a different mineralization, have found out qualitative and quantitative similarity of their influence. Used for today integrate indicators of properties of mineral waters do not explain the taped features of action. Authors come to conclusion that transition to relative indicators of properties of the mineral waters, adhered to 1 gram of the mineral substances containing in water, allows to estimate properties of mineral waters more precisely

Evolutionary Games with Affine Fitness Functions: Applications to Cancer

We analyze the dynamics of evolutionary games in which fitness is defined as an affine function of the expected payoff and a constant contribution. The resulting inhomogeneous replicator equation has an homogeneous equivalent with modified payoffs. The affine terms also influence the stochastic dynamics of a two-strategy Moran model of a finite population. We then apply the affine fitness function in a model for tumor-normal cell interactions to determine which are the most successful tumor strategies. In order to analyze the dynamics of concurrent strategies within a tumor population, we extend the model to a three-strategy game involving distinct tumor cell types as well as normal cells. In this model, interaction with normal cells, in combination with an increased constant fitness, is the most effective way of establishing a population of tumor cells in normal tissue.Comment: The final publication is available at http://www.springerlink.com, http://dx.doi.org/10.1007/s13235-011-0029-

Disposition of Federally Owned Surpluses

PDZ domains are scaffolding modules in protein-protein interactions that mediate numerous physiological functions by interacting canonically with the C-terminus or non-canonically with an internal motif of protein ligands. A conserved carboxylate-binding site in the PDZ domain facilitates binding via backbone hydrogen bonds; however, little is known about the role of these hydrogen bonds due to experimental challenges with backbone mutations. Here we address this interaction by generating semisynthetic PDZ domains containing backbone amide-to-ester mutations and evaluating the importance of individual hydrogen bonds for ligand binding. We observe substantial and differential effects upon amide-to-ester mutation in PDZ2 of postsynaptic density protein 95 and other PDZ domains, suggesting that hydrogen bonding at the carboxylate-binding site contributes to both affinity and selectivity. In particular, the hydrogen-bonding pattern is surprisingly different between the non-canonical and canonical interaction. Our data provide a detailed understanding of the role of hydrogen bonds in protein-protein interactions

A VLBA survey of the core shift effect in AGN jets I. Evidence for dominating synchrotron opacity

The effect of a frequency dependent shift of the VLBI core position (known as the "core shift") was predicted more than three decades ago and has since been observed in a few sources, but often within a narrow frequency range. This effect has important astrophysical and astrometric applications. To achieve a broader understanding of the core shift effect and the physics behind it, we conducted a dedicated survey with NRAO's Very Long Baseline Array (VLBA). We used the VLBA to image 20 pre-selected sources simultaneously at nine frequencies in the 1.4-15.4 GHz range. The core position at each frequency was measured by referencing it to a bright, optically thin feature in the jet. A significant core shift has been successfully measured in each of the twenty sources observed. The median value of the core shift is found to be 1.21 mas if measured between 1.4 and 15.4 GHz, and 0.24 mas between 5.0 and 15.4 GHz. The core position, r, as a function of frequency, n, is found to be consistent with an r n^-1 law. This behavior is predicted by the Blandford & Koenigl model of a purely synchrotron self-absorbed conical jet in equipartition. No systematic deviation from unity of the power law index in the r(n) relation has been convincingly detected. We conclude that neither free-free absorption nor gradients in pressure and/or density in the jet itself and in the ambient medium surrounding the jet play a significant role in the sources observed within the 1.4-15.4 GHz frequency range. These results support the interpretation of the parsec-scale core as a continuous Blandford-Koenigl type jet with smooth gradients of physical properties along it.Comment: 31 pages, 6 figures, 5 tables; accepted to Astronomy & Astrophysic

Human coronary plaque wall thickness correlated positively with flow shear stress and negatively with plaque wall stress: An IVUS-based fluid-structure interaction multi-patient study

BACKGROUND: Atherosclerotic plaque progression and rupture are believed to be associated with mechanical stress conditions. In this paper, patient-specific in vivo intravascular ultrasound (IVUS) coronary plaque image data were used to construct computational models with fluid-structure interaction (FSI) and cyclic bending to investigate correlations between plaque wall thickness and both flow shear stress and plaque wall stress conditions. METHODS: IVUS data were acquired from 10 patients after voluntary informed consent. The X-ray angiogram was obtained prior to the pullback of the IVUS catheter to determine the location of the coronary artery stenosis, vessel curvature and cardiac motion. Cyclic bending was specified in the model representing the effect by heart contraction. 3D anisotropic FSI models were constructed and solved to obtain flow shear stress (FSS) and plaque wall stress (PWS) values. FSS and PWS values were obtained for statistical analysis. Correlations with p < 0.05 were deemed significant. RESULTS: Nine out of the 10 patients showed positive correlation between wall thickness and flow shear stress. The mean Pearson correlation r-value was 0.278 ± 0.181. Similarly, 9 out of the 10 patients showed negative correlation between wall thickness and plaque wall stress. The mean Pearson correlation r-value was -0.530 ± 0.210. CONCLUSION: Our results showed that plaque vessel wall thickness correlated positively with FSS and negatively with PWS. The patient-specific IVUS-based modeling approach has the potential to be used to investigate and identify possible mechanisms governing plaque progression and rupture and assist in diagnosis and intervention procedures. This represents a new direction of research. Further investigations using more patient follow-up data are warranted